PD Dr.-Ing. habil.

Thomas Hinze

Postanschrift
Friedrich-Schiller-Universität Jena
Fakultät für Biowissenschaften
LS Bioinformatik am Matthias-Schleiden-Institut
Ernst-Abbe-Platz 2
07743 Jena

Telefon, Fax, E-Mail
Mobil: (0172) 79 79 603
Tel./Fax: (03641) 9 46452
E-Mail:

Besucheradresse
Ernst-Abbe-Platz 2
Raum 3407 (4. Etage)
Jena

Präsentationen

Medienpräsentationen

Interview Speichern auf Molekülen. A. Brücken, Datareport, 02.09.2022
Artikel Wie die DNA für eine neue Generation der Informationstechnik verwendet werden kann. C. Kerkmann, Handelsblatt, 07.05.2021
Artikel Wenn Bakterien ins Kino gehen. W. Ludwig, Stuttgarter Zeitung, 14.07.2017
Artikel Titelthema: Biomolekulares Computing. V. Labonte, Laborjournal Heft 1-2:32-35, 15.02.2011
Artikel Membrane Computing. Uni-Journal Jena, November 2010
Pressemitteilung Mit Zellen kann man rechnen. Informationsdienst Wissenschaft (IDW), 16.08.2010
Artikel Rechnen mit Biomolekülen. Neue Zürcher Zeitung (NZZ), 22.10.2008
Artikel Kleiner schalten. Financial Times Deutschland, S. 29, 16.11.2006
Artikel Mikrorechner gegen Krebs. Magazin Telepolis, Heise-Verlag, 04.04.2005
Artikel DNA in den Computer gepackt. Sächsische Zeitung, 10.06.2003
Fernsehbeitrag Der DNA-Computer. Produziert von WTS MixedMedia GmbH Berlin für das Wissenschaftsmagazin archimedes, arte, gesendet am 26.03.2002

Ausgewählte Vorträge und Foliensätze

H. Rehr, F. Kretschmer, C. Höner zu Siederdissen, C. Grelck, E. Barth, M. Mundhenk, T. Hinze. A Chomsky Grammar Simulator Written in the J Language. Theorietag 2024, Göttingen, Germany, 18.09.2024
B. Förster, T. Hinze, P. Langendörfer. Security Mean Distribution in WSNs for Cooperative Schemes. iCampus Cottbus Conference 2024, Cottbus, Germany, 15.05.2024
N. Civiero, A. Henderson, T. Hinze, R. Nicolescu, C. Zandron. Implementing Perceptrons by Means of Water Based Computing. 24th International Conference on Membrane Computing (CMC24), Opava, Czech Republic, 29.08.2023
B. Förster, P. Langendörfer, T. Hinze. Novel Approach to a Plant Inspired Distributed Security Scheme for Wireless Sensor Networks. 12th Mediterranean Conference on Embedded Computing (MECO), Budva, Montenegro, 07.06.2023
R. Starke, I. Vukorep, K. Frommelt, A. Melcher, T. Hinze. Towards Artificial Ossification for Bone-inspired Technical Structures. Fifth International Conference on Structures and Architecture (ICSA2022), Aalborg, Denmark, 07.07.2022
A. Henderson, R. Nicolescu, M.J. Dinneen, T. Chan, H. Happe, T. Hinze. Parallel Computing with Water. International Conference on Membrane Computing (ICMC2021), Debrecen, Hungary, 26.08.2021
A. Henderson, R. Nicolescu, M.J. Dinneen, T. Chan, H. Happe, T. Hinze. Water Computing: A P System Variant. International Conference on Membrane Computing (ICMC2020), Vienna, Austria, 15.09.2020
T. Hinze, H. Happe, R. Nicolescu. Membrane Computing with Water. 20th International Conference on Membrane Computing (CMC20), Curtea de Arges, Romania, 05.08.2019
A. Melcher, I. Vukorep, T. Hinze. Construction of Stable and Lightweight Technical Structures Inspired by Ossification of Bones using Osteogenetic P Systems. 19th International Conference on Membrane Computing (CMC19), Dresden, Germany, 06.09.2018
B. Förster, T. Hinze. Towards Automated Analysis of Belousov-Zhabotinsky Reactions in a Petri Dish by Membrane Computing using Optic Flow. 19th International Conference on Membrane Computing (CMC19), Dresden, Germany, 05.09.2018
T. Hinze, B. Förster. Event-based Life in a Nutshell: How Evaluation of Individual Life Cycles Can Reveal Statistical Inferences using Action-accumulating P Systems. 18th International Conference on Membrane Computing (CMC18), Bradford, UK, 25.07.2017
T. Hinze. Coping with Dynamical Structures for Useful Applications of Membrane Computing. Eingeladener Vortrag auf der 17th International Conference on Membrane Computing (CMC17), Milan, Italy, 26.07.2016
T. Hinze, L. Weber, U. Hatnik. Walking Membranes: Grid-exploring P Systems with Artificial Evolution for Multi-purpose Topological Optimisation of Cascaded Processes. 17th International Conference on Membrane Computing (CMC17), Milan, Italy, 27.07.2016 (Springer Award)
T. Hinze. In-vitro Molecular Computing Based on DNA Strands. Eingeladener Vortrag auf der Biotechnica2015, Hannover, Germany, 07.10.2015
T. Hinze, K. Kirkici, P. Sauer, P. Sauer, J. Behre. Membrane Computing Meets Temperature: A Thermoreceptor Model as Molecular Slide Rule with Evolutionary Potential. 16th International Conference on Membrane Computing (CMC16), Valencia, Spain, 19.08.2015
T. Hinze, K. Grützmann, B. Höckner, P. Sauer, S. Hayat. Categorised Counting Mediated by Blotting Membrane Systems for Particle-based Data Mining and Numerical Algorithms. 15th International Conference on Membrane Computing (CMC15), Prague, Czech Republic, 22.08.2014
T. Hinze. Molecular Computing. Wissenschaftlicher Vortrag im Habilitationsverfahren, FSU Jena, Germany, 11.10.2012
T. Hinze. Prinzipien zur Erzeugung von Zufallszahlen in der Informatik. Probevorlesung im Habilitationsverfahren, FSU Jena, Germany, 11.10.2012
T. Hinze, B. Schell, M. Schumann, C. Bodenstein. Maintenance of Chronobiological Information by P System Mediated Assembly of Control Units for Oscillatory Waveforms and Frequency. 13th International Conference on Membrane Computing (CMC13), Budapest, Hungary, 27.08.2012
T. Hinze. Rechnen mit Molekülen: Neue Impulse und Herausforderungen einer jungen biologisch inspirierten Informatikdisziplin. Eingeladener Vortrag an der Brandenburgischen Technischen Universität Cottbus, Institut für Informatik, Informations- und Medientechnik, Germany, 09.07.2012
T. Hinze, B. Schau, C. Bodenstein. Phase-locked Loops for Chemical Control of Oscillation Frequency: A Prototype of Biological Clocks and Their Entrainment by Light? Eingeladener Vortrag an der Technischen Universität Ilmenau, Germany, 16.11.2011
B. Schell, C. Bodenstein, T. Hinze. Modelling and Simulation of a Chemical Frequency Divider. Eingeladener Vortrag an der Technischen Universität Ilmenau, Germany, 16.11.2011
T. Hinze, C. Bodenstein, B. Schau, I. Heiland, S. Schuster. Chemical Analog Computers for Clock Frequency Control Based on P Modules. Twelfth International Conference on Membrane Computing (CMC12), Fontainebleau, France, 23.08.2011
G. Gruenert, G. Escuela, P. Dittrich, T. Hinze. Case Study of Molecular Algorithm Design. Twelfth International Conference on Membrane Computing (CMC12), Fontainebleau, France, 23.08.2011
T. Hinze, C. Bodenstein, B. Schau, I. Heiland, S. Schuster. Chemical Oscillation Frequency Control using Phase-locked Loops: A Prototype of Biological Clocks and Their Entrainment by Light? Eingeladener Vortrag an der Universität Rostock, Germany, 18.07.2011
T. Hinze, M. Schumann, C. Bodenstein, I. Heiland, S. Schuster. Biochemical Frequency Control by Synchronisation of Coupled Repressilators: An In-silico Study of Modules for Circadian Clock Systems. Eingeladener Vortrag an der University of Verona, Italy, 27.04.2011
T. Hinze, M. Schumann, S. Schuster. Synchronisation of Biological Clock Signals: Capturing Coupled Repressilators from a Control Systems Perspective. Fourth International Conference on Bio-Inspired Systems and Signal Processing (BIOSIGNALS2011), Rome, Italy, 26.01.2011
T. Hinze, J. Behre, G. Escuela. Eleventh International Conference on Membrane Computing - Opening Ceremony and News. Eröffnungsvortrag an der Friedrich-Schiller-Universität Jena, Germany, 24.08.2010
T. Hinze, J. Behre. Fourth Workshop on Membrane Computing and Biologically Inspired Process Calculi - Opening Ceremony. Eröffnungsvortrag an der Friedrich-Schiller-Universität Jena, Germany, 23.08.2010
T. Hinze. Capturing Circadian Clocks from the Perspective of Phase-Locked Loops. Vortrag am Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany, 23.06.2010
T. Hinze, M. Schumann. Systemische Betrachtung circadianer Uhren. Vortrag an der TU Ilmenau, Institut für Automatisierungs- und Systemtechnik, Fachgebiet Simulation und Optimale Prozesse, Ilmenau, Germany, 21.04.2010
T. Hinze. Membrane Systems Combining Variable Molecular Structures with Discretised Reaction Kinetics: From a Toy to a Tool in Systems Biology. Eingeladener Vortrag an der University of Milan-Bicocca, Department of Informatics, Systems and Communications, Research Group Bioinformatics, Natural Calculus, Systems Biology, Milan-Bicocca, Italy, 25.11.2009
T. Hinze, I. Heiland, B. Schau, T. Lenser, S. Schuster. Reverse Engineering by Artificial Network Evolution. International Workshop Integrative Network Inference in Systems Biology (IWINISB2009), Jena, Germany, 09.10.2009
T. Hinze, T. Lenser, G. Escuela, I. Heiland, S. Schuster. Cell Signalling P Systems with Discretised Reaction Kinetics. 19. Theorietag Automaten und Formale Sprachen (TT19), Wittenberg, Germany, 29.09.2009
T. Hinze, T. Lenser, G. Escuela, I. Heiland, S. Schuster. Modelling Signalling Networks with Incomplete Information about Protein Activation States: A P System Framework of the KaiABC Oscillator. Tenth International Workshop on Membrane Computing (WMC10), Curtea de Arges, Romania, 24.08.2009
T. Hinze, R. Fassler, G. Escuela, B. Ibrahim, S. Schuster. Computation by Synthetic Cell Signaling and Oscillating Processes Modelled using Mass-Action Kinetics. Fifth Conference on Computability in Europe (CiE2009), Heidelberg, Germany, 20.07.2009
T. Hinze. Biologically Inspired Computing: Successes and Challenges. Eingeladener Vortrag an der TU Dresden, Institut für Technische Informatik, Professur für VLSI-Entwurfssysteme, Diagnostik und Architektur, 15.04.2009
T. Hinze. Membrane Systems in Algebraic Biology: From a Toy to a Tool. Oberseminar, Jena Center for Bioinformatics (JCB), 29.01.2009
N. Matsumaru, T. Lenser, F. Centler, P. Speroni di Fenizio, T. Hinze, P. Dittrich. Common Organizational Structures within Two Chemical Flip-Flops. Third International Workshop on Natural Computing (IWNC2008), Yokohama, Japan, 23.09.2008
T. Lenser, N. Matsumaru, T. Hinze, P. Dittrich. Tracking the Evolution of Chemical Computing Networks. Eleventh International Conference on the Simulation and Synthesis of Living Systems (Artificial Life XI), Winchester, UK, 05.08.2008
T. Hinze, R. Fassler, T. Lenser, N. Matsumaru, P. Dittrich. Event-Driven Metamorphoses of P Systems. Ninth International Workshop on Membrane Computing (WMC9), Edinburgh, UK, 30.07.2008
R. Fassler, T. Hinze, T. Lenser, P. Dittrich. Construction of Oscillating Chemical Register Machines on Binary Numbers using Mass-Action Kinetics. Prague International Workshop on Membrane Computing in conjunction with DNA14 (PIWMC2008), Prague, Czech Republic, 02.06.2008
H. Rohn, B. Ibrahim, T. Lenser, T. Hinze, P. Dittrich. Enhancing Parameter Estimation of Biochemical Networks by Exponentially Scaled Search Steps. Sixth European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics (EvoBIO2008), Naples, Italy, 27.03.2008
T. Hinze, S. Hayat, T. Lenser, N. Matsumaru, P. Dittrich. Biosignal-Based Computing by AHL Induced Synthetic Gene Regulatory Networks. First International Conference on Bio-Inspired Systems and Signal Processing (BIOSIGNALS2008), Funchal, Portugal, 30.01.2008
P. Dittrich, T. Hinze, B. Ibrahim, T. Lenser, N. Matsumaru. Hierarchically Evolvable Components for Complex Systems: Biologically Inspired Algorithmic Design. European Conference on Complex Systems (ECCS2007), TU Dresden, 02.10.2007
T. Hinze, R. Fassler, T. Lenser, N. Matsumaru, P. Dittrich. Effizient chemisch rechnen durch deterministische Reaktionssysteme mit Regelpriorisierung. 17. Theorietag Automaten und Formale Sprachen (TT17), Universität Leipzig, 29.09.2007
P. Dittrich, T. Hinze, T. Lenser. ESIGNET Meeting Autumn 2007: Report of Jena Group. Technische Universiteit Eindhoven, The Netherlands, 03.09.2007
T. Hinze, S. Hayat, T. Lenser, N. Matsumaru, P. Dittrich. Hill Kinetics Meets P Systems: A Case Study on Gene Regulatory Networks as Computing Agents in silico and in vivo. Eight Workshop on Membrane Computing (WMC8), Thessaloniki, Greece, 25.06.2007
P. Dittrich, T. Hinze, T. Lenser. ESIGNET Meeting Spring 2007: Report of Jena Group. University of Birmingham, UK, 19.04.2007
T. Lenser, T. Hinze, B. Ibrahim, P. Dittrich. Towards Evolutionary Network Reconstruction Tools for Systems Biology. Fifth European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics (EvoBIO2007), Valencia, Spain, 12.04.2007
T. Hinze, T. Lenser, P. Dittrich. Cell Signalling Networks - Biological Computers with Universal Computational Capacity. 16. Theorietag Automaten und Formale Sprachen (TT16), TU Wien, Austria, 29.09.2006
T. Hinze, T. Lenser, P. Dittrich. A Protein Substructure Based P System for Description and Analysis of Cell Signalling Networks. Seventh Workshop on Membrane Computing (WMC7), University of Leiden, The Netherlands, 17.07.2006
P. Dittrich, T. Hinze, T. Lenser. ESIGNET Meeting Autumn 2006: Report of Jena Group. Dublin City University, Artificial Life Laboratory, Ireland, 29.08.2006
T. Hinze. Computing with Molecules at Dresden University of Technology. Eingeladener Vortrag am Jena Centre for Bioinformatics (JCB), 08.12.2005
T. Hinze, M. Sturm. Eine DNA-Arithmetik auf der Basis von Chomsky-Grammatiken. 14. Theorietag "Automaten und Formale Sprachen", Caputh, 29.09.2004
T. Hinze, M. Sturm. Computing with Molecules at Dresden University of Technology. Vortrag vor Vertretern des Air Force Office of Scientific Research (AFOSR), 19.02.2004
T. Hinze. Universelle Modelle und ausgewählte Algorithmen des DNA-Computing. Verteidigung der Dissertation, TU Dresden, 23.09.2002
T. Hinze. Prinzipien zur Erzeugung von Zufallszahlen in der Informatik. Fachvortrag im Rahmen des Promotionsverfahrens, TU Dresden, 23.09.2002
T. Hinze. Ein probabilistischer Ansatz zur labornahen Simulation molekularbiologischer Prozesse des DNA-Computing. Forschungsvortrag am Institut für Technische Informatik, Fakultät Informatik, TU Dresden, 10.07.2002
U. Hatnik, T. Hinze, M. Sturm. A Probabilistic Approach to Description of Molecular Biological Processes on DNA and Their Object Oriented Simulation. WSES International Conference on Simulation (SIM2001), Malta, 05.09.2001
T. Hinze, U. Hatnik, M. Sturm. An Object Oriented Simulation of Real Occurring Molecular Biological Processes for DNA Computing and Its Experimental Verification. Seventh International Meeting on DNA-Based Computers (DNA7), Tampa, FL, USA, 11.06.2001
M. Sturm, T. Hinze. DNA-Computing an der TU Dresden. Regionalgruppe Dresden der Gesellschaft für Informatik e.V. und des German Chapter of ACM e.V., Dresden, 11.01.2001
T. Hinze, M. Sturm. Towards an in-vitro Implementation of a Universal Distributed Splicing Model for DNA Computation. Theorietag 2000 (TT2000), TU Wien, Austria, 27.09.2000
M. Sturm, T. Hinze. Distributed Splicing of RE with 6 Test Tubes. Workshop on Multiset Processing (WMP2000), Curtea de Arges, Romania, 25.08.2000
T. Hinze. DNA-Computing - eine populärwissenschaftliche Einführung. Forschungsseminar am Institut für Oberflächenphysik und Mikrostrukturphysik an der Fakultät Mathematik und Naturwissenschaften, TU Dresden, 11.01.2000
T. Hinze. Molekularbiologische Operationen des DNA-Computing. Vortragsreihe Unkonventionelle Modelle der Berechenbarkeit, Arbeitsgemeinschaft "Computing with Molecules" an der Fakultät Informatik, TU Dresden, 02.11.1999

Poster

C. Bodenstein, B. Schau, I. Heiland, S. Schuster, T. Hinze. Modelling Biological Frequency Control of Circadian Rhythms using a Phase-locked Loop. Posterpräsentation, Twelfth International Conference on Systems Biology (ICSB2011), University of Heidelberg, 2011
M. Schumann, T. Hinze, S. Schuster. Synchronisation of Clocks: Comparing Mechanisms in Biological and Technical Distributed Systems. Posterpräsentation, German Conference on Bioinformatics (GCB2010), Carolo-Wilhelmina University of Technology Braunschweig, 2010
B. Schau, T. Hinze, T. Lenser, I. Heiland, S. Schuster. Control System-Based Reverse Engineering of Circadian Oscillators. Posterpräsentation, German Conference on Bioinformatics (GCB2009), Martin-Luther University Halle-Wittenberg, 2009
I. Heiland, T. Hinze, O. Voytsekh, M. Mittag, S. Schuster. Temperature Regulation of Circadian Rhythms. Posterpräsentation, German Conference on Bioinformatics (GCB2009), Martin-Luther University Halle-Wittenberg, 2009
T. Hinze, T. Lenser, I. Heiland, S. Schuster. Backtracking Membrane Systems Unravel Stable Oscillations in Distributed Reaction Networks. Posterpräsentation, The IET Conference on Synthetic Biology, Systems Biology and Bioinformatics (BioSysBio2009), University of Cambridge, UK, 2009
I. Heiland, T. Hinze, O. Voytsekh, O. Ebenhöh, M. Mittag, S. Schuster. The Role of Phosphorylation in Circadian Rhythms. Posterpräsentation, Third FEBS Advanced Lecture Course on Systems Biology: From Molecular Biology to Biological Function (FEBS-SysBio2009), Alpbach, Austria, 2009
P. Dittrich, T. Hinze, B. Ibrahim, T. Lenser, N. Matsumaru. Hierarchically Evolvable Components for Complex Systems: Biologically Inspired Algorithmic Design. Posterpräsentation, (ECCS2007), TU Dresden, 2007
N. Matsumaru, T. Lenser, T. Hinze, P. Dittrich. Designing a Chemical Program using Chemical Organization Theory. Posterpräsentation, BioSysBio2007, Manchester, UK, 2007
J. Decraene, P. Dittrich, T. Hinze, T. Lenser, B. McMullin, G. Mitchell. A Multidisciplinary Survey of Modeling Techniques for Biochemical Networks. Posterpräsentation, Integrative Post-Genomics (IPG'06), Lyon, France, 2006
T. Lenser, T. Hinze, P. Dittrich. Evolving Biological Networks. Posterpräsentation, Fifth International Conference on Unconventional Computation (UC06), University of York, UK, 04.-08.09.2006
T. Hinze, M. Sturm. A universal functional approach to DNA computing and its experimental practicability. Posterpräsentation, Sixth International Meeting on DNA Based Computers (DNA6), University of Leiden, The Netherlands, 15.06.2000